PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496474.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 449aa    MW: 51375.2 Da    PI: 6.8235
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.22.9e-25119215183
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                     +Wt+++v+++i+a+++++e++ ++              +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++  +
  XP_004496474.1 119 KWTDKMVRLMITAVSYIGEDITSDGggggsgrkrfavlQKKGKWKSVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPGL 213
                     7********************98755667788899999**********************************************55888887766 PP

        trihelix  82 fd 83 
                     +d
  XP_004496474.1 214 LD 215
                     66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-23117244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDGNLSQGGI LQSGVGNSFG GFDLPGSIQV HHQAHHPHTI HQHQVHPNRG SSLHSSDHDG  60
FPLTMGTLQN CDQNISMGDR SKNSTSEDDE PSFNEDGFDG QHELGRGKKG LSSPWQRVKW  120
TDKMVRLMIT AVSYIGEDIT SDGGGGGSGR KRFAVLQKKG KWKSVSKVMA ERGCHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PGLLDLIDYL SEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ CSMQLAIRNR DDHDNDDIRR FHLDGHDEDE QDVEIDEHDD  300
FKETCASRSH SRGIFGQLSG STKKLKQIQG QEDANAFGNS LNCQDYNKGS YPRGQMVHSD  360
VNQALPESTR TAWLQKQWLD SRQFQLEEQK LQIQVEMLEL EKQRFKWQRF SKKKDRELEK  420
LSLENERMKI ENERMALELK RKEMNIGFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496474.10.0PREDICTED: uncharacterized protein LOC101496200
TrEMBLA0A0L9TZE40.0A0A0L9TZE4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN940.0A0A0S3SN94_PHAAN; Uncharacterized protein
STRINGGLYMA10G36980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-157sequence-specific DNA binding transcription factors